- The University Clinics of the Faculty of Medicine are housed in the following city hospitals: AHEPA, Ippokratio, Papanikolaou, Papageorgiou, G. Genimatas, and the Hospital of Skin and Venereal Diseases.
- The clinics of the Faculty of Veterinary Medicine provide students with training and ill animals with treatment. The clinics are housed in facilities owned by the university, which cover an area of about 1.6 hectares and are located in Giannitson Street, between the old and the new Railway Station of the city of Thessaloniki.
- The Animal Breeding and Treatment Station is located in Kolhiko in the area of Langadas, 27 km from the centre of Thessaloniki, and is part of the Faculty of Veterinary Medicine. It covers an area of 200 hectares donated to the Aristotle University of Thessaloniki by the Local Community Council of Kolhiko, where the facilities of the Faculty of Veterinary Medicine were built to support the teaching and research work carried out.